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SRX1012764: GSM1669159: JC2591_Xenograft_MCF7_PR_E2 r14; Homo sapiens; ChIP-Seq
3 ILLUMINA (Illumina HiSeq 2000) runs: 32.8M spots, 1.6G bases, 901Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: ChIP-seq of ER and PR in xenografted MCF7 tumors grown in mice [xenograft]
PRJNA282506 • SRP057757 • All experiments • All runs
show Abstracthide Abstract
Exploring effect of estrogen and/or progesterone treatment on xenografts tumors in vivo Overall design: MCF7 cells implanted in mice (two each), subjected to different treatment. Six replicates of each condition we ChIPed.
Sample: JC2591_Xenograft_MCF7_PR_E2 r14
SAMN03570823 • SRS924528 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2000
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: immunoprecipitated DNA was end-repaired, A-tailed, ligated to the sequencing adapters, amplified by 18 cycles of PCR and size selected (200-300 bp) followed by single end 4 sequencing on an Illumina HiSeq 2000 according to the manufacturer’s recommendationas described in Chandra, T. et al. Independence of Repressive Histone Marks and ChromatinCompaction during Senescent Heterochromatic Layer Formation. Mol Cell 47, 203–214 (2012)
Experiment attributes:
GEO Accession: GSM1669159
Links:
External link:
Runs: 3 runs, 32.8M spots, 1.6G bases, 901Mb
Run# of Spots# of BasesSizePublished
SRR20010078,764,700438.2M268Mb2015-05-22
SRR200100811,891,784594.6M315.3Mb2015-05-22
SRR200100912,112,420605.6M317.7Mb2015-05-22

ID:
1467616

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